Regarding the SYNC stuff, do you have the same blocks as in this screenshot:
http://www.rodytheroady.nl/foto/normaal-traktor.png
(check out the top row with the FX units, but on the left there is a sync-block. In there you should choose INT(ernal) and then 100 bpm for example.
Do you normally have problems with sync as well (without using the apc?)
This is really the weird part. The filter-change is hard coded per button. So if you click on the blue/red/green buttons below the switch to the specific filter is hard coded and set to delay/slicer/masher.
When I'm at home I'll try to check the TSI again and make a screenshot of the part where I set the filters in my TSI, maybe you can then, or already, check what your TSI says?
Do you have all filters enabled in your preferences?
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